Peer-Reviewed Publications

Wednesday, February 17, 2021

Ultrasound-Based Molecular Imaging of Tumors with PTPmu Biomarker-Targeted Nanobubble Contrast Agents

Johasen, M., Perera, R., Abenojar, E., Wang, X., Vincent, J., Exner, A., ... Brady-Kalnay, S. (2021). Ultrasound-Based Molecular Imaging of Tumors with PTPmu Biomarker-Targeted Nanobubble Contrast Agents. Int. J. Mol. Sci., 22 (4), 1983.

Tuesday, February 16, 2021

Salt Dependent Structure in Methylcellulose Fibrillar Gels

Liberman, L., Schmidt, P., Coughlin, M., Matatyaho, A., Davidovich, I., Edmund, J., ... Lodge, T. (2021). Salt Dependent Structure in Methylcellulose Fibrillar Gels. Macromolecules, 54 (), 2090–2100.
DOI: 10.1021/acs.macromol.0c02429

Tuesday, February 2, 2021

Do deep eutectic solvents behave like concentrated electrolytes? A perspective from the electrode-electrolyte interface

Dean, W., Klein, J., & Gurkan, B. (2021). Do deep eutectic solvents behave like concentrated electrolytes? A perspective from the electrode-electrolyte interface. Journal of Electrochemical Society, 168 (2).
DOI: 10.1149/1945-7111/abde83

Tuesday, February 2, 2021

Scattering methods for determining structure and dynamics of polymer gels

Morozova, S., Hitimana, E., Dhakal, S., Wilcox, K., & Estrin, D. (2021). Scattering methods for determining structure and dynamics of polymer gels. Journal of Applied Physics, 129 (), 071101.

Monday, February 1, 2021

Design for Reliability: Tradeoffs between Lifetime and Performance due to Electromigration

Wolff, F., Weyer, D., Papachristou, C. A., & Clay, S. (2021). Design for Reliability: Tradeoffs between Lifetime and Performance due to Electromigration. Elsevier, Microelectronics Reliability, 117 (), 12 pages.

Monday, February 1, 2021

Feature-driven local cell graph (FLocK): New computational pathology-based descriptors for prognosis of lung cancer and HPV status of oropharyngeal cancers

Lu, C., Koyuncu, C., Corredor-Prada, G., Prasanna, P., Leo, P., WAng, X., ... Madabhushi, A. (2021). Feature-driven local cell graph (FLocK): New computational pathology-based descriptors for prognosis of lung cancer and HPV status of oropharyngeal cancers. Medical Image Analysis, 68 ().

Monday, February 1, 2021

New Results and Examples in Semiglobal Asymptotic Stabilization of Nonaffine Systems by Sampled-Data Output Feedback

Sun, J. (2021). New Results and Examples in Semiglobal Asymptotic Stabilization of Nonaffine Systems by Sampled-Data Output Feedback. Systems and Control Letters, 148 (), 1-9.
DOI: 10.1016/j.sysconle.2020.104850

Monday, February 1, 2021

Standardized microfluidic assessment of red blood cell-mediated microcapillary occlusion: Association with clinical phenotype and hydroxyurea responsiveness in sickle cell disease.

Freeman, B., Kucukal, E., Nrasimhan, S., Bode, A., Little, J., & Gurkan, U. (2021). Standardized microfluidic assessment of red blood cell-mediated microcapillary occlusion: Association with clinical phenotype and hydroxyurea responsiveness in sickle cell disease.. Microcirculation (New York, N.Y. : 1994), 28 (2), e12662.

Saturday, January 30, 2021

A Lagrangian meshfree mesoscale simulation of powder bed fusion additive manufacturing of metals

Fan, Z., Wang, Z., Huang, Z., Liao, H., Fan, J., Lu, J., ... Li, B. (2021). A Lagrangian meshfree mesoscale simulation of powder bed fusion additive manufacturing of metals. International Journal for Numerical Methods in Engineering, 122 (2), 483-514.

Saturday, January 30, 2021

A physical interpretation of regularization for optical flow methods in fluids

Schmidt, B. E., & Sutton, J. (2021). A physical interpretation of regularization for optical flow methods in fluids. Experiments in Fluids, 62 (34), 6.

Friday, January 22, 2021

Small-Molecule-Based Prodrug Targeting Prostate Specific Membrane Antigen for the Treatment of Prostate Cancer.

Wang, X., Shirke, A., Walker, E., Sun, R., Ramamurthy, G., Wang, J., ... Basilion, J. (2021). Small-Molecule-Based Prodrug Targeting Prostate Specific Membrane Antigen for the Treatment of Prostate Cancer.. Cancers, 13 (3), 417.

Thursday, January 14, 2021

Deep eutectic solvent formed by imidazolium cyanopyrrolide and ethylene glycol for reactive CO2 separations

Lee, Y., Penley, D., Dean, W., Klemm, A., & Gurkan, B. (2021). Deep eutectic solvent formed by imidazolium cyanopyrrolide and ethylene glycol for reactive CO2 separations. ACS Sustainable Chemistry & Engineering, 9 (3), 1090-1098.
DOI: 10.1021/acssuschemeng.0c07217

Tuesday, January 12, 2021

Experimental study of concurrent-flow flame spread over thin solids in confined space in microgravity

Li, Y., Liao, Y. T., Ferkul, P., Johnston, M., & Bunnell, C. (2021). Experimental study of concurrent-flow flame spread over thin solids in confined space in microgravity. Combustion and Flame, 227 (), 39-51.
DOI: 10.1016/j.combustflame.2020.12.042

Thursday, January 7, 2021

Cellulose nanocrystals: accelerator and reinforcing filler for epoxy vitrimerization

Yue, L., Amirkhosravi, M., Ke, K., Gray, T., & Manas-Zloczower, I. (2021). Cellulose nanocrystals: accelerator and reinforcing filler for epoxy vitrimerization. ACS Applied Materials & Interfaces, 13 (2), 3419–3425.

Friday, January 1, 2021

A Framework for Enhancing Deep Neural Networks Against Adversarial Malware

Li, D., Li, Q., Ye, F., & Xu, S. (2021). A Framework for Enhancing Deep Neural Networks Against Adversarial Malware. IEEE Transactions on Network Science and Engineering, 8 (1), 736-750.

Friday, January 1, 2021

A prognostic and predictive computational pathology image signature for added benefit of adjuvant chemotherapy in early stage non-small-cell lung cancer

WAng, X., Bera, K., Barrera, C., Zhou, Y., Lu, C., Vaidya, P., ... Madabhushi, A. (2021). A prognostic and predictive computational pathology image signature for added benefit of adjuvant chemotherapy in early stage non-small-cell lung cancer. EBIOMEDICINE, 69 ().

Friday, January 1, 2021

An improved weighted index for the assessment of heavy metal pollution in soils in Zhejiang, China

Yang, H., Wang, F., Yuan, Y., Huang, K., Zhang, H., & Fu, Z. (2021). An improved weighted index for the assessment of heavy metal pollution in soils in Zhejiang, China. ENVIRONMENTAL RESEARCH, 192 ().

Friday, January 1, 2021

BiCoSS: Toward large-scale cognition brain with multigranular neuromorphic architecture

Yang, S., Wang, J., Hao, X., Li, H., Wei, X., Deng, B., ... Loparo, K. A. (2021). BiCoSS: Toward large-scale cognition brain with multigranular neuromorphic architecture. IEEE Transactions on Neural Networks and Learning Systems, ().

Friday, January 1, 2021

Co-occurrence Patterns of Intimate Partner Violence

Hac\ialiefendio\uglu, Ahmet, Y\ilmaz, Serhan, Koyut\"urk, Mehmet, & Karakurt, G\"unnur (2021). Co-occurrence Patterns of Intimate Partner Violence. , ().

Friday, January 1, 2021

Collagen fiber orientation disorder from H\&E images is prognostic for early stage breast cancer: clinical trial validation

Li, H., Bera, K., Toro, P., Fu, P., Zhang, Z., Lu, C., ... Others (2021). Collagen fiber orientation disorder from H\&E images is prognostic for early stage breast cancer: clinical trial validation. npj Breast Cancer, 7 (1), 1--10.

Friday, January 1, 2021

Comparison of automated beam hardening correction (ABHC) algorithms for myocardial perfusion imaging using computed tomography.

Levi, J., Wu, H., Beck, B., Fahmi, R., Vembar, M., Dhanantwari, A., ... Wilson, D. L. (2021). Comparison of automated beam hardening correction (ABHC) algorithms for myocardial perfusion imaging using computed tomography.. Medical physics, 48 (1), 287-299.

Friday, January 1, 2021

Computerized tumor multinucleation index (MuNI) is prognostic in p16+ oropharyngeal carcinoma

Koyuncu, C., Lu, C., Bera, K., Zhang, Z., Xue, Z., Toro, P., ... Others (2021). Computerized tumor multinucleation index (MuNI) is prognostic in p16+ oropharyngeal carcinoma. The Journal of Clinical Investigation, 131 (8).

Friday, January 1, 2021

Data-driven identification of subtypes of intimate partner violence

Hac\ialiefendio\uglu, Ahmet Mert, Y\ilmaz, Serhan, Smith, D., Whiting, J., Koyut\"urk, Mehmet, & Karakurt, G\"unnur (2021). Data-driven identification of subtypes of intimate partner violence. Scientific reports, 11 (1), 1--13.

Friday, January 1, 2021

Development and evaluation of deep learningbased segmentation of histologic structures in the kidney cortex with multiple histologic stains

Jayapandian, C., Chen, Y., Janowczyk, A., Palmer, M., Cassol, C., Sekulic, M., ... Adler, S. (2021). Development and evaluation of deep learningbased segmentation of histologic structures in the kidney cortex with multiple histologic stains. Kidney International, 99 (1), 86-101.

Friday, January 1, 2021

Development and evaluation of deep learning–based segmentation of histologic structures in the kidney cortex with multiple histologic stains

Jayapandian, C., Chen, Y., Janowczyk, A., Palmer, M., Cassol, C., Sekulic, M., ... Howlin, B. (2021). Development and evaluation of deep learning–based segmentation of histologic structures in the kidney cortex with multiple histologic stains. Kidney International, 99 (1), 86-101.

Friday, January 1, 2021

Dimensional Stacking for Machine Learning in ToF-SIMS Analysis of Heterostructures

Abbasi, K., Smith, H., Hoffman, M., Farghadany, E., Bruckman, L., & Sehirlioglu, A. (2021). Dimensional Stacking for Machine Learning in ToF-SIMS Analysis of Heterostructures. ADVANCED MATERIALS INTERFACES, 8 (3).

Friday, January 1, 2021

Ecological risk potential assessment of heavy metal contaminated soils in Ophiolitic formations

Negahban, S., Mokarram, M., Pourghasemi, H., & Zhang, H. (2021). Ecological risk potential assessment of heavy metal contaminated soils in Ophiolitic formations. ENVIRONMENTAL RESEARCH, 192 ().

Friday, January 1, 2021

Evolution of humic substances in polymerization of polyphenol and amino acid based on non-destructive characterization

Zou, J., Huang, J., Zhang, H., & Yue, D. (2021). Evolution of humic substances in polymerization of polyphenol and amino acid based on non-destructive characterization. FRONTIERS OF ENVIRONMENTAL SCIENCE & ENGINEERING, 15 (1).

Friday, January 1, 2021

Facilitating large-scale snow shedding from in-field solar arrays using icephobic surfaces with low-interfacial toughness

Dhyani, A., Pike, C., \customboldJennifer L. Braid, Whitney, E., Burnham, L., & Tuteja, A. (2021). Facilitating large-scale snow shedding from in-field solar arrays using icephobic surfaces with low-interfacial toughness. Advanced Materials, ().

Friday, January 1, 2021

Genomic Data Sharing under Dependent Local Differential Privacy

Yilmaz, E., Ji, T., Ayday, E., & Li, P. (2021). Genomic Data Sharing under Dependent Local Differential Privacy. arXiv preprint arXiv:2102.07357, ().

Friday, January 1, 2021

Guest Editorial: Special Issue on recent advancements in electric power system planning with high-penetration of renewable energy resources and dynamic loads

Sajadi, A., Strezoski, L., Khodaei, A., Loparo, K. A., Fotuhi-Firuzabad, M., Preece, R., ... Others (2021). Guest Editorial: Special Issue on recent advancements in electric power system planning with high-penetration of renewable energy resources and dynamic loads. International Journal of Electrical Power \& Energy Systems, 129 (), 106597.

Friday, January 1, 2021

Integrated Computational Materials Engineering of Gamma Titanium Aluminides for Aerospace Applications

Tamirisakandala, S., Dahar, M., & Lewandowski, J. J. (2021). Integrated Computational Materials Engineering of Gamma Titanium Aluminides for Aerospace Applications. MATEC Web of Conferences, 321 (), 08002.
DOI: 10.1051/matecconf/202032108002

Friday, January 1, 2021

Lower-Limb Amputees Adjust Quiet Stance in Response to Manipulations of Plantar Sensation

Shell, C., Christie, B., Marasco, P., Charkhkar, H., & Triolo, R. (2021). Lower-Limb Amputees Adjust Quiet Stance in Response to Manipulations of Plantar Sensation. Frontiers in neuroscience, 15 (), 118.

Friday, January 1, 2021

Measurement of crack length in width tapered beam experiments

Kempe, M., Morse, J., Eafanti, J., Julien, S., Wan, K., Bruckman, L., ... French, R. H. (2021). Measurement of crack length in width tapered beam experiments. JOURNAL OF ADHESION SCIENCE AND TECHNOLOGY, 35 (4), 357-374.

Friday, January 1, 2021

Microstructural and micro-mechanical analysis of 14YWT nanostructured Ferritic alloy after varying thermo-mechanical processing paths into tubing

Harvey, C., El Atwani, Osman, Kim, H., Lavender, C., McCoy, M., Sornin, D., ... Pathak, S. (2021). Microstructural and micro-mechanical analysis of 14YWT nanostructured Ferritic alloy after varying thermo-mechanical processing paths into tubing. MATERIALS CHARACTERIZATION, 171 ().

Friday, January 1, 2021

Molecular image-convolutional neural network (CNN) assisted QSAR models for predicting contaminant reactivity toward OH radicals: Transfer learning, data augmentation and model interpretation

Zhong, S., Hu, J., Yu, B., & Zhang, H. (2021). Molecular image-convolutional neural network (CNN) assisted QSAR models for predicting contaminant reactivity toward OH radicals: Transfer learning, data augmentation and model interpretation. CHEMICAL ENGINEERING JOURNAL, 408 ().

Friday, January 1, 2021

Monitoring DOACs with a Novel Dielectric Microsensor: A Clinical Study

Maji, D., Opneja, A., Suster, M., Bane, K., Wilson, B., Mohseni, P., ... Stavrou, E. (2021). Monitoring DOACs with a Novel Dielectric Microsensor: A Clinical Study. Thrombosis and Haemostasis, ().

Friday, January 1, 2021

Nanostructured Iron-Nitride Martensite Synthesized from Fe79Mo10B10Cu1 Magnetic Nanocomposite Alloy

Willard, M. A., Dong, B., & Lan, S. (2021). Nanostructured Iron-Nitride Martensite Synthesized from Fe79Mo10B10Cu1 Magnetic Nanocomposite Alloy. Journal of Magnetism and Magnetic Materials, (), 167677.

Friday, January 1, 2021

Neural control of rhythmic limb motion is shaped by size and speed

Sutton, G., Szczecinski, N., Quinn, R. D., & Chiel, H. (2021). Neural control of rhythmic limb motion is shaped by size and speed. , ().

Friday, January 1, 2021

Predicting Microbe-disease Association Based on Multiple Similarities and LINE Algorithm

Wang, Y., Lei, X., Lu, C., & Greenspan, H. (2021). Predicting Microbe-disease Association Based on Multiple Similarities and LINE Algorithm. IEEE/ACM Transactions on Computational Biology and Bioinformatics, ().

Friday, January 1, 2021

Predicting the Optical and Electrical Properties of Polymer Nanocomposites

Hore, M. J. (2021). Predicting the Optical and Electrical Properties of Polymer Nanocomposites. Springer, (), 259-280.

Friday, January 1, 2021

Privacy-Preserving and Efficient Verification of the Outcome in Genome-Wide Association Studies

Halimi, A., Dervishi, L., Ayday, E., Pyrgelis, A., Troncoso-Pastoriza, J., Hubaux, J., ... Vaidya, J. (2021). Privacy-Preserving and Efficient Verification of the Outcome in Genome-Wide Association Studies. arXiv preprint arXiv:2101.08879, ().

Friday, January 1, 2021

Quantitative structure activity relationships (QSARs) and machine learning models for abiotic reduction of organic compounds by an aqueous Fe(II) complex

Gao, Y., Zhong, S., Torralba-Sanchez, T., Tratnyek, P., Weber, E., Chen, Y., ... Zhang, H. (2021). Quantitative structure activity relationships (QSARs) and machine learning models for abiotic reduction of organic compounds by an aqueous Fe(II) complex. WATER RESEARCH, 192 ().

Friday, January 1, 2021

Radiomics-based assessment of ultra-widefield leakage patterns and vessel network architecture in the PERMEATE study: insights into treatment durability

Prasanna, P., Bobba, V., Figueiredo, N., Sevgi, D., Lu, C., Braman, N., ... Others (2021). Radiomics-based assessment of ultra-widefield leakage patterns and vessel network architecture in the PERMEATE study: insights into treatment durability. British Journal of Ophthalmology, 105 (8), 1155--1160.

Friday, January 1, 2021

Robust inference of kinase activity using functional networks

Y\ilmaz, Serhan, Ayati, M., Schlatzer, D., \cCi\ccek, A Erc\"ument, Chance, M., & Koyut\"urk, Mehmet (2021). Robust inference of kinase activity using functional networks. Nature communications, 12 (1), 1--12.

Friday, January 1, 2021

Shedding light on "Black Box" machine learning models for predicting the reactivity of HO center dot radicals toward organic compounds

Zhong, S., Zhang, K., Wang, D., & Zhang, H. (2021). Shedding light on "Black Box" machine learning models for predicting the reactivity of HO center dot radicals toward organic compounds. CHEMICAL ENGINEERING JOURNAL, 405 ().

Friday, January 1, 2021

Solar Transposition Modeling via Deep Neural Networks with Sky Images

Pierce, B., \customboldJennifer L. Braid, Stein, J., Augustyn, J., & Riley., D. (2021). Solar Transposition Modeling via Deep Neural Networks with Sky Images. IEEE Journal of Photovoltaics, ().

Friday, January 1, 2021

Spatiotemporal Graph Neural Network for Performance Prediction of Photovoltaic Power Systems

Karimi, A., Wu, Y., Koyutürk, M., & French, R. H. (2021). Spatiotemporal Graph Neural Network for Performance Prediction of Photovoltaic Power Systems. , ().

Friday, January 1, 2021

System Dynamics-Multiple Objective Optimization Model for Water Resource Management: A Case Study in Jiaxing City, China

Zhou, X., Wang, F., Huang, K., Zhang, H., Yuan, Y., & Han, A. (2021). System Dynamics-Multiple Objective Optimization Model for Water Resource Management: A Case Study in Jiaxing City, China. WATER, 13 (5).

Friday, January 1, 2021

Test-retest repeatability of a deep learning architecture in detecting and segmenting clinically significant prostate cancer on apparent diffusion coefficient (ADC) maps

Hiremath, A., Shiradkar, R., Merisaari, H., Prasanna, P., Ettala, O., Taimen, P., ... Madabhushi, A. (2021). Test-retest repeatability of a deep learning architecture in detecting and segmenting clinically significant prostate cancer on apparent diffusion coefficient (ADC) maps. European Radiology, 31 (1), 379-391.

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