Peer-Reviewed Publications

Thursday, April 1, 2010

Detecting copy number variations from array CGH data based on a conditional random field model.

Yin, X., & Li, J. (2010). Detecting copy number variations from array CGH data based on a conditional random field model.. Journal of bioinformatics and computational biology, 8 (2), 295-314.

Thursday, April 1, 2010

Identification of a microRNA panel for clear-cell kidney cancer.

Juan, D., Alexe, G., Antes, T., Liu, H., Madabhushi, A., Delisi, C., ... Liou, L. (2010). Identification of a microRNA panel for clear-cell kidney cancer.. Urology, 75 (4), 835-41.

Thursday, April 1, 2010

Increased adiposity in the retinol saturase-knockout mouse.

Moise, A., Lobo, G., Erokwu, B., Wilson, D. L., Peck, D., Alvarez, S., ... Palczewski, K. (2010). Increased adiposity in the retinol saturase-knockout mouse.. FASEB journal : official publication of the Federation of American Societies for Experimental Biology, 24 (4), 1261-70.

Thursday, April 1, 2010

Science for Energy Technology: Strengthening the Link between Basic Research and Industry

French, R. H. (). . , ().

Thursday, April 1, 2010

Thin film tandem photovoltaic cell from II-IV-V chalcopyrites

Van Schilfgaarde, M., Coutts, T., Newman, N., & Peshek, T. (2010). Thin film tandem photovoltaic cell from II-IV-V chalcopyrites. Applied Physics Letters, 96 (14), 143503.

Monday, March 1, 2010

Chondrogenic differentiation of human mesenchymal stem cell aggregates via controlled release of TGF-beta1 from incorporated polymer microspheres.

Solorio, L., Fu, X., Hernández-Irizarry, R., & Alsberg, E. (2010). Chondrogenic differentiation of human mesenchymal stem cell aggregates via controlled release of TGF-beta1 from incorporated polymer microspheres.. Journal of biomedical materials research. Part A, 92 (3), 1139-44.

Monday, March 1, 2010

Computerized image-based detection and grading of lymphocytic infiltration in HER2+ breast cancer histopathology.

Basavanhally, A., Ganesan, S., Agner, S., Monaco, J., Feldman, M., Tomaszewski, J., ... Madabhushi, A. (2010). Computerized image-based detection and grading of lymphocytic infiltration in HER2+ breast cancer histopathology.. IEEE transactions on bio-medical engineering, 57 (3), 642-53.

Monday, March 1, 2010

Contraction-by-contraction VO2 and computer-controlled pump perfusion as novel techniques to study skeletal muscle metabolism in situ.

Hernández, A., Goodwin, M., Lai, N., Cabrera, M., McDonald, J., & Gladden, L. (2010). Contraction-by-contraction VO2 and computer-controlled pump perfusion as novel techniques to study skeletal muscle metabolism in situ.. Journal of applied physiology (Bethesda, Md. : 1985), 108 (3), 705-12.

Monday, March 1, 2010

Cyclodextrin-based device coatings for affinity-based release of antibiotics.

Thatiparti, T., Shoffstall, A., & Von Recum, H. (2010). Cyclodextrin-based device coatings for affinity-based release of antibiotics.. Biomaterials, 31 (8), 2335-47.

Monday, March 1, 2010

Effect of humeral head defect size on glenohumeral stability: a cadaveric study of simulated Hill-Sachs defects.

Kaar, S., Fening, PhD, S., Jones, M., Colbrunn, R., & Miniaci, A. (2010). Effect of humeral head defect size on glenohumeral stability: a cadaveric study of simulated Hill-Sachs defects.. The American journal of sports medicine, 38 (3), 594-9.

Monday, March 1, 2010

Stress-Transfer in Anisotropic and Environmentally Adaptive CelluloseWhisker Nanocomposites

Rusli, R., Shanmuganathan, K., Rowan, S. J., Weder, C., & Eichhorn, S. (2010). Stress-Transfer in Anisotropic and Environmentally Adaptive CelluloseWhisker Nanocomposites. BIOMACROMOLECULES, 11 (3), 762-768.

Monday, March 1, 2010

VISAGE: A Query Interface for Clinical Research.

Zhang, G., Siegler, T., Saxman, P., Sandberg, N., Mueller, R., Johnson, R., ... Arabandi, S. (2010). VISAGE: A Query Interface for Clinical Research.. AMIA Summits on Translational Science proceedings AMIA Summit on Translational Science, 2010 (), 76-80.

Thursday, February 11, 2010

Topology controlled supramolecular self-assembly of octa triphenylene-substituted polyhedral oligomeric silsesquioxane (POSS) hybrid supermolecules

Zhu, L. (2010). Topology controlled supramolecular self-assembly of octa triphenylene-substituted polyhedral oligomeric silsesquioxane (POSS) hybrid supermolecules. , ().

Monday, February 1, 2010

Improved fat-water reconstruction algorithm with graphics hardware acceleration.

Johnson, R., Narayan, S., Flask, C., & Wilson, D. L. (2010). Improved fat-water reconstruction algorithm with graphics hardware acceleration.. Journal of magnetic resonance imaging : JMRI, 31 (2), 457-65.

Monday, January 18, 2010

A novel approach for haplotype-based association analysis using family data.

Chen, Q., Li , X., & Li, J. (2010). A novel approach for haplotype-based association analysis using family data.. BMC bioinformatics, 11 Suppl 1 (), S45.

Friday, January 15, 2010

MAVEN: a tool for visualization and functional analysis of genome-wide association results.

Narayanan, K., & Li, J. (2010). MAVEN: a tool for visualization and functional analysis of genome-wide association results.. Bioinformatics (Oxford, England), 26 (2), 270-2.

Tuesday, January 12, 2010

Crystal orientation effect on electric energy storage in poly(vinylidene fluoride-co-hexafluoropropylene) copolymers

Zhu, L. (2010). Crystal orientation effect on electric energy storage in poly(vinylidene fluoride-co-hexafluoropropylene) copolymers. , ().

Tuesday, January 12, 2010

Hydrogen bond-assisted supramolecular assembly of doubly discotic supermolecules based on porphyrin and triphenylene

Zhu, L. (2010). Hydrogen bond-assisted supramolecular assembly of doubly discotic supermolecules based on porphyrin and triphenylene. , ().

Friday, January 1, 2010

2-D assembly of colloidal particles on a planar electrode

Prieve, D., Sides, P., & Wirth, C. L. (2010). 2-D assembly of colloidal particles on a planar electrode. Current Opinion in Colloid \& Interface Science, 15 (3), 160--174.

Friday, January 1, 2010

A belief propagation based recommender system for online services

Ayday, E., & Fekri, F. (2010). A belief propagation based recommender system for online services. , (), 217--220.

Friday, January 1, 2010

A belief propagation based recommender system for online services

Ayday, E., & Fekri, F. (2010). A belief propagation based recommender system for online services. , (), 217--220.

Friday, January 1, 2010

A cochlear heterodyning architecture for an RF fovea

Mandal, S., & Sarpeshkar, R. (2010). A cochlear heterodyning architecture for an RF fovea. , (), 3825--3828.

Friday, January 1, 2010

A headband for classifying human postures

Aloqlah, M., Lahiji, R., Loparo, K. A., & Mehregany, M. (2010). A headband for classifying human postures. , (), 382–385.

Friday, January 1, 2010

A Low-Power Battery-Free Tag for Body Sensor Networks

Mandal, S., Turicchia, L., & Sarpeshkar, R. (2010). A Low-Power Battery-Free Tag for Body Sensor Networks. IEEE Pervasive Computing, 9 (1), 71-77.

Friday, January 1, 2010

A protocol for data availability in Mobile Ad-Hoc Networks in the presence of insider attacks

Ayday, E., & Fekri, F. (2010). A protocol for data availability in Mobile Ad-Hoc Networks in the presence of insider attacks. Ad Hoc Networks, 8 (2), 181--192.

Friday, January 1, 2010

A protocol for data availability in Mobile Ad-Hoc Networks in the presence of insider attacks

Ayday, E., & Fekri, F. (2010). A protocol for data availability in Mobile Ad-Hoc Networks in the presence of insider attacks. Ad Hoc Networks, 8 (2), 181--192.

Friday, January 1, 2010

Advanced querying interface for biochemical network databases

Elliott, B., Mayes, S., Cakmak, A., Ozsoyoglu, T., & Ozsoyoglu, Z. (2010). Advanced querying interface for biochemical network databases. , (), 1526–1533.

Friday, January 1, 2010

Algorithmic and analytical methods in network biology

Koyut\"urk, Mehmet (2010). Algorithmic and analytical methods in network biology. Wiley Interdisciplinary Reviews: Systems Biology and Medicine, 2 (3), 277--292.

Friday, January 1, 2010

An imaging ammeter for electrochemical measurements

Sides, P., Wirth, C. L., & Prieve, D. (2010). An imaging ammeter for electrochemical measurements. Electrochemical and Solid-State Letters, 13 (), F10.

Friday, January 1, 2010

An integrative-omics approach to identify functional sub-networks in human colorectal cancer

Nibbe, R., Koyut\"urk, Mehmet, & Chance, M. (2010). An integrative-omics approach to identify functional sub-networks in human colorectal cancer. PLoS computational biology, 6 (1), e1000639.

Friday, January 1, 2010

An obstacle-edging reflex for an autonomous lawnmower

Daltorio, K. A., Rolin, A., Beno, J., Hughes, B., Schepelmann, A., Branicky, M. S., ... Green, J. (2010). An obstacle-edging reflex for an autonomous lawnmower. , (), 1079--1092.

Friday, January 1, 2010

Analysis and modeling of ensemble recordings from respiratory pre-motor neurons indicate changes in functional network architecture after acute hypoxia

Galána, R., Dick, T., & Baekey, D. (2010). Analysis and modeling of ensemble recordings from respiratory pre-motor neurons indicate changes in functional network architecture after acute hypoxia. Frontier in Computational Neuroscience, 4 ().

Friday, January 1, 2010

Analysis and modeling of ensemble recordings from respiratory pre-motor neurons indicate changes in functional network architecture after acute hypoxia

Friday, January 1, 2010

Application of system identification methods for decoding imagined single-joint movements in an individual with high tetraplegia

Ajiboye, A Bolu, Hochberg, L., Donoghue, J., & Kirsch, B. F. (2010). Application of system identification methods for decoding imagined single-joint movements in an individual with high tetraplegia. , (), 2678–2681.

Friday, January 1, 2010

Bio-inspired mechanically-adaptive nanocomposites

Weder, C., Capadona, JR, Shanmuganathan, K., & Rowan, S. (2010). Bio-inspired mechanically-adaptive nanocomposites. Polymer Preprints (American Chemical Society, Division of Polymer Chemistry), 51 (), 269--270.

Friday, January 1, 2010

Bio-inspired mechanically-adaptive nanocomposites derived from cotton cellulose whiskers

Shanmuganathan, K., Capadona, J. R., Rowan, S. J., & Weder, C. (2010). Bio-inspired mechanically-adaptive nanocomposites derived from cotton cellulose whiskers. Journal of Materials Chemistry, 20 (1), 180--186.

Friday, January 1, 2010

Bio-inspired mechanically-adaptive nanocomposites derived from cottoncellulose whiskers

Shanmuganathan, K., Capadona, J. R., Rowan, S. J., & Weder, C. (2010). Bio-inspired mechanically-adaptive nanocomposites derived from cottoncellulose whiskers. JOURNAL OF MATERIALS CHEMISTRY, 20 (1), 180-186.

Friday, January 1, 2010

Biodegradable, Photocrosslinked Alginate Hydrogels with Independently Tailorable Physical Properties and Cell Adhesivity

Jeon, O., Powell, C., Ahmed, S., & Alsberg, E. (2010). Biodegradable, Photocrosslinked Alginate Hydrogels with Independently Tailorable Physical Properties and Cell Adhesivity. TISSUE ENGINEERING PART A, 16 (9), 2915-2925.

Friday, January 1, 2010

Biodegradable, photocrosslinked alginate hydrogels with independently tailorable physical properties and cell adhesivity

Jeon, O., Powell, C., Ahmed, S., & Alsberg, E. (2010). Biodegradable, photocrosslinked alginate hydrogels with independently tailorable physical properties and cell adhesivity. Tissue Engineering Part A, 16 (9), 2915–2925.

Friday, January 1, 2010

Biomimetic mechanically adaptive nanocomposites

Shanmuganathan, K., Capadona, J. R., Rowan, S. J., & Weder, C. (2010). Biomimetic mechanically adaptive nanocomposites. PROGRESS IN POLYMER SCIENCE, 35 (1-2, SI), 212-222.

Friday, January 1, 2010

Calcium phosphate-DNA nanoparticle gene delivery from alginate hydrogels induces in vivo osteogenesis

Krebs, M., Salter, E., Chen, E., Sutter, K., & Alsberg, E. (2010). Calcium phosphate-DNA nanoparticle gene delivery from alginate hydrogels induces in vivo osteogenesis. Journal of Biomedical Materials Research Part A, 92 (3), 1131–1138.

Friday, January 1, 2010

Carbon-Enhanced Passivity of PH13–8 Mo: A Precipitation-Hardened Martensitic Stainless Steel

Heuer, A. H., Kahn, H., Ernst, F., Michal, G., Rayne, R., Martin, F., ... Natishan, P. (2010). Carbon-Enhanced Passivity of PH13–8 Mo: A Precipitation-Hardened Martensitic Stainless Steel. Electrochemical and Solid-State Letters C, 13 (), 37-39.

Friday, January 1, 2010

Cerium Oxide Thin Films on Solid Oxide Fuel Cell Anodes

Tang, L., Salamon, M., & De Guire, M. R. (2010). Cerium Oxide Thin Films on Solid Oxide Fuel Cell Anodes. Sci. Adv. Mater., 2 (), 79–89.

Friday, January 1, 2010

Chondrogenic differentiation of human mesenchymal stem cell aggregates via controlled release of TGF-$β$1 from incorporated polymer microspheres

Solorio, L., Fu, A., Hernández-Irizarry, R., & Alsberg, E. (2010). Chondrogenic differentiation of human mesenchymal stem cell aggregates via controlled release of TGF-$β$1 from incorporated polymer microspheres. Journal of Biomedical Materials Research Part A, 92 (3), 1139–1144.

Friday, January 1, 2010

Closure to "Nonlinear Uniaxial Material Model for Reinforcing Steel Bars" by Sashi K. Kunnath, YeongAe Heo, and Jon F. Mohle

Kunnath, S., & Heo, Y. (2010). Closure to "Nonlinear Uniaxial Material Model for Reinforcing Steel Bars" by Sashi K. Kunnath, YeongAe Heo, and Jon F. Mohle. Journal of Structural Engineering-Asce, 136 (7), 918-920.

Friday, January 1, 2010

Cokgen: a software for the identification of rare copy number variation from SNP microarrays

Yava\cs, G\"okhan, Koyut\"urk, Mehmet, \"Ozsoyo\uglu, Meral, Gould, M., & LaFramboise, T. (2010). Cokgen: a software for the identification of rare copy number variation from SNP microarrays. , (), 371--382.

Friday, January 1, 2010

Comparison of morphology, orientation, and migration of tendon derived fibroblasts and bone marrow stromal cells on electrochemically aligned collagen constructs

Gurkan, U., Cheng, X., Kishore, V., Uquillas, J., & Akkus, O. (2010). Comparison of morphology, orientation, and migration of tendon derived fibroblasts and bone marrow stromal cells on electrochemically aligned collagen constructs. Journal of Biomedical Materials Research Part A, 94 (4), 1070–1079.

Friday, January 1, 2010

Comparison of temporal variability of epileptic ECoG signals

Janjarasjitt, S., & Loparo, K. A. (2010). Comparison of temporal variability of epileptic ECoG signals. , 2 (), V2–259.

Friday, January 1, 2010

Conduction block of peripheral nerve using high-frequency alternating currents delivered through an intrafascicular electrode.

Ackermann, Jr, D., Foldes, E., Bhadra, N., & Kilgore, K. (2010). Conduction block of peripheral nerve using high-frequency alternating currents delivered through an intrafascicular electrode.. Muscle & nerve, 41 (1), 117-9.

Friday, January 1, 2010

Construction, figures of merit, and testing of a single-cell fluorescence excitation spectroscopy system

Hill, L., Richardson, T., Profeta, L., Shaw, T., Hintz, C., Twining, B., ... Myrick, M. (2010). Construction, figures of merit, and testing of a single-cell fluorescence excitation spectroscopy system. Review of Scientific Instruments, 81 (1), 013103.

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