Peer-Reviewed Publications

Sunday, January 1, 2012

Three-Dimensional Electrospun Alginate Nanofiber Mats via Tailored Charge Repulsions

Bonino, C., Efimenko, K., Jeong, S., Krebs, M., Alsberg, E., & Khan, S. (2012). Three-Dimensional Electrospun Alginate Nanofiber Mats via Tailored Charge Repulsions. Small, 8 (12), 1928–1936.

Sunday, January 1, 2012

Toward potential supramolecular tissue engineering scaffolds based onguanosine derivatives

Buerkle, L., Von Recum, H., & Rowan, S. J. (2012). Toward potential supramolecular tissue engineering scaffolds based onguanosine derivatives. CHEMICAL SCIENCE, 3 (2), 564-572.

Sunday, January 1, 2012

Trunk acceleration for neuroprosthetic control of standing: a pilot study

Nataraj, R., Audu, M. L., Kirsch, B. F., & Triolo, R. (2012). Trunk acceleration for neuroprosthetic control of standing: a pilot study. J Appl Biomech, 28 (1), 85-92.

Sunday, January 1, 2012

Tunable protein and bacterial cell adsorption on colloidally templated superhydrophobic polythiophene films

(2012). Tunable protein and bacterial cell adsorption on colloidally templated superhydrophobic polythiophene films. , 24 (), 870–880.

Sunday, January 1, 2012

User-aware privacy control via extended static-information-flow analysis

Xiao, X., Tillmann, N., Fahndrich, M., De Halleux, J., & Moskal, M. (2012). User-aware privacy control via extended static-information-flow analysis. International Conference on Automated Software Engineering (ASE), (), 80–89.

Sunday, January 1, 2012

Using protein interaction networks to understand complex diseases

Koyutürk, M. (2012). Using protein interaction networks to understand complex diseases. IEEE Computer, 45 (3), 31-38.

Sunday, January 1, 2012

Vapochromic and mechanochromic films from square-planar platinumcomplexes in polymethacrylates

Kumpfer, J., Taylor, S., Connick, W., & Rowan, S. J. (2012). Vapochromic and mechanochromic films from square-planar platinumcomplexes in polymethacrylates. JOURNAL OF MATERIALS CHEMISTRY, 22 (28), 14196-14204.

Sunday, January 1, 2012

Variability in Cadence During Forced Cycling Predicts Motor Improvement in Individuals With Parkinson’s Disease

Ridgel, A., Mohammadi-Abdar, H., Alberts, J., Discenzo, F., & Loparo, K. A. (2012). Variability in Cadence During Forced Cycling Predicts Motor Improvement in Individuals With Parkinson’s Disease. IEEE, ().

Sunday, January 1, 2012

Virtual reality for post-stroke shoulder-arm motor rehabilitation: Training system & assessment method

Yeh, S., Lee, S., Wang, J., Chen, S., Chen, Y., Yang, Y., ... Hung, Y. (2012). Virtual reality for post-stroke shoulder-arm motor rehabilitation: Training system & assessment method. , (), 190–195.

Sunday, January 1, 2012

Volatility Diagrams for Cr–O and Cr–Cl and Their Application to Removing the Passive Film from the Surface of Stainless Steel

Hsieh, M., Ge, Y., Michal, G., Ernst, F., & Heuer, A. H. (2012). Volatility Diagrams for Cr–O and Cr–Cl and Their Application to Removing the Passive Film from the Surface of Stainless Steel. Metallurgical and Materials Transactions, 43 (), 1187-1201.

Sunday, January 1, 2012

Volumetric Assessment of Coronary Calcification Using Optical Coherence Tomography

Mehanna, E., Prabhu, D., Brandt, E., Yamamoto, H., Chamie, D., Attizzani, G., ... Costa, M. (2012). Volumetric Assessment of Coronary Calcification Using Optical Coherence Tomography. Journal of the American College of Cardiology, 59 (13), E122-E122.

Sunday, January 1, 2012

Welcome to ACS Macro Letters

Lodge, T., & Rowan, S. J. (2012). Welcome to ACS Macro Letters. ACS MACRO LETTERS, 1 (1), 1-2.

Sunday, January 1, 2012

Worms, waves and robots

Boxerbaum, A., Horchler, A., Shaw, K., Chiel, H., & Quinn, R. D. (2012). Worms, waves and robots. , (), 3537–3538.

Saturday, December 31, 2011

Effect of Visuo-Haptic Co-location on 3D Fitts' Task Performance.

Fu, M. J., Hershberger, A., Sano, K., & Cavusoglu, M. C. (2011). Effect of Visuo-Haptic Co-location on 3D Fitts' Task Performance.. Proceedings of the ... IEEE/RSJ International Conference on Intelligent Robots and Systems. IEEE/RSJ International Conference on Intelligent Robots and Systems, 2011 (), 3460-3467.

Monday, December 19, 2011

Supervised regularized canonical correlation analysis: integrating histologic and proteomic measurements for predicting biochemical recurrence following prostate surgery.

Golugula, A., Lee, G., Master, S., Feldman, M., Tomaszewski, J., Speicher, D., ... Madabhushi, A. (2011). Supervised regularized canonical correlation analysis: integrating histologic and proteomic measurements for predicting biochemical recurrence following prostate surgery.. BMC bioinformatics, 12 (), 483.

Sunday, December 18, 2011

A Method for Evaluation of Longitudinal Joint Connections of Decked Precast Concrete Girder Bridges

Smith, M., Li, Y., & Bulleit, W. (2011). A Method for Evaluation of Longitudinal Joint Connections of Decked Precast Concrete Girder Bridges. Journal of Structural Engineering and Mechanic, 40 (3).

Sunday, December 18, 2011

A Probabilistic-based Framework for Impact and Adaptation Assessment of Climate Change on Hurricane Damage Risks and Costs

Bjarnadottir, S., Li, Y., & Stewart, M. (2011). A Probabilistic-based Framework for Impact and Adaptation Assessment of Climate Change on Hurricane Damage Risks and Costs. Structural Safety, 33 (3), 173-185.

Sunday, December 18, 2011

Cyclone Damage Risks Caused by Enhanced Greenhouse Conditions and Economic Viability of Strengthened Residential Construction

Li, Y., & Stewart, M. (2011). Cyclone Damage Risks Caused by Enhanced Greenhouse Conditions and Economic Viability of Strengthened Residential Construction. Natural Hazards Review, ASCE, 12 (1), 9-18.

Sunday, December 18, 2011

Loss Estimation of Light-Frame Wood Construction Subjected to Mainshock-Aftershock Sequences

Yin, Y., & Li, Y. (2011). Loss Estimation of Light-Frame Wood Construction Subjected to Mainshock-Aftershock Sequences. Journal of Performance of Constructed Facilities, ASCE, 25 (6), 504-513.

Sunday, December 18, 2011

Probabilistic loss assessment of light-frame wood construction subjected to combined seismic and snow loads

Yin, Y., & Li, Y. (2011). Probabilistic loss assessment of light-frame wood construction subjected to combined seismic and snow loads. Engineering Structures, 33 (2), 380-390.

Sunday, December 18, 2011

Social Vulnerability Index for Coastal Communities at Risk to Hurricane Hazard and a Changing Climate

Bjarnadottir, S., Li, Y., & Stewart, M. (2011). Social Vulnerability Index for Coastal Communities at Risk to Hurricane Hazard and a Changing Climate. Natural Hazards, 9 (2), 1055-1075.

Sunday, December 18, 2011

Stochastic Modeling of Snow Loads Using a Filtered Poisson Process

Yin, Y., Li, Y., & Bulleit, W. (2011). Stochastic Modeling of Snow Loads Using a Filtered Poisson Process. Journal of Cold Regions Engineering, ASCE, 25 (1), 16-36.

Friday, December 16, 2011

In vivo response to electrochemically aligned collagen bioscaffolds.

Kishore, V., Alfredo Uquillas, J., Dubikovsky, A., Alshehabat, M., Snyder, P., Breur, G., ... Akkus, O. (2011). In vivo response to electrochemically aligned collagen bioscaffolds.. Journal of biomedical materials research. Part B, Applied biomaterials, ().

Thursday, December 1, 2011

A high-throughput active contour scheme for segmentation of histopathological imagery.

Xu, J., Janowczyk, A., Chandran, S., & Madabhushi, A. (2011). A high-throughput active contour scheme for segmentation of histopathological imagery.. Medical image analysis, 15 (6), 851-62.

Thursday, December 1, 2011

Accuracy of measurement of Hill-Sachs lesions with computed tomography.

Kodali, P., Jones, M., Polster, J., Miniaci, A., & Fening, PhD, S. (2011). Accuracy of measurement of Hill-Sachs lesions with computed tomography.. Journal of shoulder and elbow surgery, 20 (8), 1328-34.

Thursday, December 1, 2011

Dynamics and sensitivity analysis of high-frequency conduction block.

Ackermann, D., Bhadra, N., Gerges, M., & Thomas, P. (2011). Dynamics and sensitivity analysis of high-frequency conduction block.. Journal of neural engineering, 8 (6), 065007.

Thursday, December 1, 2011

Improved temporal resolution in cardiac imaging using through-time spiral GRAPPA.

Seiberlich, N. E., Lee, H., Ehses, P., Duerk, J., Gilkeson, R., & Griswold, M. (2011). Improved temporal resolution in cardiac imaging using through-time spiral GRAPPA.. Magnetic resonance in medicine : official journal of the Society of Magnetic Resonance in Medicine / Society of Magnetic Resonance in Medicine, 66 (6), 1682-8.

Thursday, December 1, 2011

Mechanically adaptive intracortical implants improve the proximity ofneuronal cell bodies

Harris, J., Capadona, J. R., Miller, R., Healy, B., Shanmuganathan, K., Rowan, S. J., ... Tyler, D. J. (2011). Mechanically adaptive intracortical implants improve the proximity ofneuronal cell bodies. JOURNAL OF NEURAL ENGINEERING, 8 (6).

Thursday, December 1, 2011

OnWARD: ontology-driven web-based framework for multi-center clinical studies.

Tran, V., Johnson, R., Redline, S., & Zhang, G. (2011). OnWARD: ontology-driven web-based framework for multi-center clinical studies.. Journal of biomedical informatics, 44 Suppl 1 (), S48-53.

Wednesday, November 9, 2011

PathCase-SB architecture and database design.

Cakmak, A., Qi, X., Coskun, M., Dashiell, M., Cheng, R., Cicek, A., ... Ozsoyoglu, Z. M. (2011). PathCase-SB architecture and database design.. BMC systems biology, 5 (), 188.

Friday, November 4, 2011

Cell targeting with hybrid Qβ virus-like particles displaying epidermal growth factor.

Pokorski, J. K., Hovlid, M., & Finnis, M. (2011). Cell targeting with hybrid Qβ virus-like particles displaying epidermal growth factor.. Chembiochem : a European journal of chemical biology, 12 (16), 2441-7.

Tuesday, November 1, 2011

A novel command signal for motor neuroprosthetic control.

Moss, C., Kilgore, K., & Peckham, H. H. (2011). A novel command signal for motor neuroprosthetic control.. Neurorehabilitation and neural repair, 25 (9), 847-54.

Tuesday, November 1, 2011

Haplotype reconstruction in large pedigrees with untyped individuals through IBD inference.

Li , X., & Li, J. (2011). Haplotype reconstruction in large pedigrees with untyped individuals through IBD inference.. Journal of computational biology : a journal of computational molecular cell biology, 18 (11), 1411-21.

Tuesday, November 1, 2011

K-space reconstruction with anisotropic kernel support (KARAOKE) for ultrafast partially parallel imaging.

Miao, J., Wong, W., Narayan, S., & Wilson, D. L. (2011). K-space reconstruction with anisotropic kernel support (KARAOKE) for ultrafast partially parallel imaging.. Medical physics, 38 (11), 6138-42.

Tuesday, November 1, 2011

Preliminary evaluation of a novel polymer nanocomposite as a root-end filling material.

Chogle, S., Duhaime, C., Mickel, A., Shaikh, S., Reese, R., Bogle, J., ... Qutubuddin, S. (2011). Preliminary evaluation of a novel polymer nanocomposite as a root-end filling material.. International endodontic journal, 44 (11), 1055-60.

Tuesday, November 1, 2011

Vavien: an algorithm for prioritizing candidate disease genes based on topological similarity of proteins in interaction networks.

Erten, S., Bebek, G., & Koyutürk, M. (2011). Vavien: an algorithm for prioritizing candidate disease genes based on topological similarity of proteins in interaction networks.. Journal of computational biology, 18 (11), 1561-74.

Tuesday, November 1, 2011

Representation of natural occlusion boundaries by human and ideal observers and relationship to natural image statistics

DiMattina, C., & Lewicki, M. S. (2011). Representation of natural occlusion boundaries by human and ideal observers and relationship to natural image statistics. , ().

Friday, October 28, 2011

An active learning based classification strategy for the minority class problem: application to histopathology annotation.

Doyle, S., Monaco, J., Feldman, M., Tomaszewski, J., & Madabhushi, A. (2011). An active learning based classification strategy for the minority class problem: application to histopathology annotation.. BMC bioinformatics, 12 (), 424.

Tuesday, October 25, 2011

Detailed Characterization of Local Field Potential Oscillations and Their Relationship to Spike Timing in the Antennal Lobe of the Moth Manduca sexta.

Daly, K., Galána, R., Peters, O., & Staudacher, E. (2011). Detailed Characterization of Local Field Potential Oscillations and Their Relationship to Spike Timing in the Antennal Lobe of the Moth Manduca sexta.. Frontiers in neuroengineering, 4 (), 12.

Monday, October 24, 2011

Simultaneous visualization of surface topography and concentration field by means of scanning electrochemical microscopy using a single electrochemical probe and impedance spectroscopy.

Pähler, M., Schuhmann, W., & Gratzl, M. (2011). Simultaneous visualization of surface topography and concentration field by means of scanning electrochemical microscopy using a single electrochemical probe and impedance spectroscopy.. Chemphyschem : a European journal of chemical physics and physical chemistry, 12 (15), 2798-805.

Saturday, October 15, 2011

Comparative analysis of algorithms for next-generation sequencing read alignment.

Ruffalo, M., LaFramboise, T., & Koyutürk, M. (2011). Comparative analysis of algorithms for next-generation sequencing read alignment.. Bioinformatics (Oxford, England), 27 (20), 2790-6.

Saturday, October 1, 2011

Changes in myofilament proteins, but not Ca²⁺ regulation, are associated with a high-fat diet-induced improvement in contractile function in heart failure.

Cheng, Y., Li , W., McElfresh, T., Cheng, X., Berthiaume, J., Castel, L., ... Chandler, M. (2011). Changes in myofilament proteins, but not Ca²⁺ regulation, are associated with a high-fat diet-induced improvement in contractile function in heart failure.. American journal of physiology. Heart and circulatory physiology, 301 (4), H1438-46.

Saturday, October 1, 2011

Changes in myofilament proteins, but not Ca²⁺ regulation, are associated with a high-fat diet-induced improvement in contractile function in heart failure.

Saturday, October 1, 2011

Characterization of minimum error linear coding with sensory and neural noise.

Doi, E., & Lewicki, M. S. (2011). Characterization of minimum error linear coding with sensory and neural noise.. Neural Computation, 23 (10), 2498–2510.

Saturday, October 1, 2011

Computer-aided prognosis: predicting patient and disease outcome via quantitative fusion of multi-scale, multi-modal data.

Madabhushi, A., Agner, S., Basavanhally, A., Doyle, S., & Lee, G. (2011). Computer-aided prognosis: predicting patient and disease outcome via quantitative fusion of multi-scale, multi-modal data.. Computerized medical imaging and graphics : the official journal of the Computerized Medical Imaging Society, 35 (7-8), 506-14.

Saturday, October 1, 2011

Determining histology-MRI slice correspondences for defining MRI-based disease signatures of prostate cancer.

Xiao, G., Bloch, B., Chappelow, J., Genega, E., Rofsky, N., Lenkinski, R., ... Madabhushi, A. (2011). Determining histology-MRI slice correspondences for defining MRI-based disease signatures of prostate cancer.. Computerized medical imaging and graphics : the official journal of the Computerized Medical Imaging Society, 35 (7-8), 568-78.

Saturday, October 1, 2011

HistoStitcher(©): an interactive program for accurate and rapid reconstruction of digitized whole histological sections from tissue fragments.

Chappelow, J., Tomaszewski, J., Feldman, M., Shih, N., & Madabhushi, A. (2011). HistoStitcher(©): an interactive program for accurate and rapid reconstruction of digitized whole histological sections from tissue fragments.. Computerized medical imaging and graphics : the official journal of the Computerized Medical Imaging Society, 35 (7-8), 557-67.

Saturday, October 1, 2011

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