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Zou, J., Einolghozati, A., Ayday, E., & Fekri, F.(2013).Iterative similarity inference via message passing in factor graphs for collaborative filtering..
Gurkan Cavusoglu, E., Schupp, J., KInsella, T., & Loparo, K. A.(2013).Quantitative Analysis of the Effects of Iododeoxyuridine and Ionizing Radiation Treatment on the Cell Cycle Dynamics of DNA Mismatch Repair Deficient Human Colorectal Cancer Cells.IET Systems Biology ,7(4),114-124.
Ayday, E., RAISARO, J., Hengartner, U., Jacklin, S., MOLYNEAUX, A., & Hubaux, J.(2013).Towards privacy compliance in the management of raw genomic data..
Cicek, A., & Ozsoyoglu, T.(2012).Observation Conflict resolution in Steady-State metabolic network dynamics Analysis.Journal of Bioinformatics and Computational Biology,10(2).
Manilich, E., Trubachev, V., Church, J., & Ozsoyoglu, Z. M.(2012).Future of Family History Data: From Mobile Devices to Electronic Health Records to Scientific Discoveries. AMIA 2012 Annual Symposium.
Lu, S., Gargesha, M., Wang, Z., Chamie, D., Attizzani, G., Kanaya, T., Ray, S., Costa, M., Rollins, A. M., Bezerra, H. M., & Wilson, D. L.(2012).Automatic stent detection in intravascular OCT images using bagged decision trees..Biomedical optics express,3(11),2809-24.
Ruffalo, M., Koyutürk, M., Ray, S., & LaFramboise, T.(2012).Accurate estimation of short read mapping quality for next-generation genome sequencing..Bioinformatics (Oxford, England),28(18),i349-i355.
Bebek, G., Koyutürk, M., Price, N., & Chance, M.(2012).Network biology methods integrating biological data for translational science..Briefings in bioinformatics,13(4),446-59.
Coskun, M., Qi, X., Cakmak, A., Cheng, R., Cicek, A., Yang, L., Jadeja, R., Dash, R., Lai, N., Ozsoyoglu, T., & Ozsoyoglu, Z. M.(2012).PathCase-SB: integrating data sources and providing tools for systems biology research..BMC systems biology,6(1),67.
Liu, Y., Koyutürk, M., Barnholtz-Sloan, J., & Chance, M.(2012).Gene interaction enrichment and network analysis to identify dysregulated pathways and their interactions in complex diseases..BMC systems biology,6, 65.
Coskun, S., Qi, X., Cakmak, A., Cheng, E., Cicek, A., Yang, L., Jajeda, R., Dash, R., Lai, N., Ozsoyoglu, T., & Ozsoyoglu, Z. M.(2012).PathCase-SB: integrating data sources and providing tools for systems biology research..BMC Systems Biology Journal,6(67).
Connamacher, H., & Molloy, M.(2012).The Satisfiability Threshold for a Seemingly Intractable Random Constraint Satisfaction Problem.SIAM Journal on Discrete Mathematics,26(2),768-800.
Cakmak, A., Qi, X., Cicek, A., Bederman, I., Henderson, L., Drumm, M., & Ozsoyoglu, T.(2012).A New Metabolomics Analysis Technique: Steady-State metabolic network Dynamics Analysis.Journal of Bioinformatics and Computational Biology,10(2).
Xiao, X., Paradkar, A., Thummalapenta, S., & Xie, T.(2012).Automated extraction of security policies from natural-language software documents.International Symposium on the Foundations of Software Engineering (FSE).
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