Ayday, E., RAISARO, J., Humbert, M., & Hubaux, J.(2013).Towards Quantifying and Preventing the Leakage of Genomic Data Using Privacy-Enhancing Technologies..
Hayes, M., & Li, J.(2013).Bellerophon: a hybrid method for detecting interchromosomal rearrangements at base pair resolution using next-generation sequencing data..BMC bioinformatics,14 Suppl 5, S6.
Cicek, A., & Ozsoyoglu, T.(2012).Observation Conflict resolution in Steady-State metabolic network dynamics Analysis.Journal of Bioinformatics and Computational Biology,10(2).
Manilich, E., Trubachev, V., Church, J., & Ozsoyoglu, Z. M.(2012).Future of Family History Data: From Mobile Devices to Electronic Health Records to Scientific Discoveries. AMIA 2012 Annual Symposium.
Lu, S., Gargesha, M., Wang, Z., Chamie, D., Attizzani, G., Kanaya, T., Ray, S., Costa, M., Rollins, A. M., Bezerra, H. M., & Wilson, D. L.(2012).Automatic stent detection in intravascular OCT images using bagged decision trees..Biomedical optics express,3(11),2809-24.
Ruffalo, M., Koyutürk, M., Ray, S., & LaFramboise, T.(2012).Accurate estimation of short read mapping quality for next-generation genome sequencing..Bioinformatics (Oxford, England),28(18),i349-i355.
Bebek, G., Koyutürk, M., Price, N., & Chance, M.(2012).Network biology methods integrating biological data for translational science..Briefings in bioinformatics,13(4),446-59.
Coskun, M., Qi, X., Cakmak, A., Cheng, R., Cicek, A., Yang, L., Jadeja, R., Dash, R., Lai, N., Ozsoyoglu, T., & Ozsoyoglu, Z. M.(2012).PathCase-SB: integrating data sources and providing tools for systems biology research..BMC systems biology,6(1),67.
Liu, Y., Koyutürk, M., Barnholtz-Sloan, J., & Chance, M.(2012).Gene interaction enrichment and network analysis to identify dysregulated pathways and their interactions in complex diseases..BMC systems biology,6, 65.
Coskun, S., Qi, X., Cakmak, A., Cheng, E., Cicek, A., Yang, L., Jajeda, R., Dash, R., Lai, N., Ozsoyoglu, T., & Ozsoyoglu, Z. M.(2012).PathCase-SB: integrating data sources and providing tools for systems biology research..BMC Systems Biology Journal,6(67).
Connamacher, H., & Molloy, M.(2012).The Satisfiability Threshold for a Seemingly Intractable Random Constraint Satisfaction Problem.SIAM Journal on Discrete Mathematics,26(2),768-800.
Cakmak, A., Qi, X., Cicek, A., Bederman, I., Henderson, L., Drumm, M., & Ozsoyoglu, T.(2012).A New Metabolomics Analysis Technique: Steady-State metabolic network Dynamics Analysis.Journal of Bioinformatics and Computational Biology,10(2).
Erten, S., Ayati, M., Liu, Y., Chance, M., & Koyutürk, M.(2012).Algorithms for detecting complementary SNPs within a region of interest that are associated with diseases.ACM Conf. Bioinformatics, Computational Biology and Biomedicine ,3, 194-201.
Liu, Y., Maxwell, S., Feng, J., Zhu, X., Elston, R., Koyutürk, M., & Chance, M.(2012).Gene, pathway and network frameworks to identify epistatic interactions of single nucleotide polymorphisms derived from GWAS data..BMC systems biology,6 Suppl 3, S15.
Pandita, R., Xiao, X., Zhong, H., Xie, T., Oney, S., & Paradkar, A.(2012).Inferring Method Specifications from Natural Language API Descriptions.International Conference on Software Engineering (ICSE).
