Ruffalo, M., Koyutürk, M., & Sharan, R.(2015).Network-Based Integration of Disparate Omic Data To Identify "Silent Players" in Cancer.PLoS Computational Biology.
Ruffalo, M., Koyutürk, M., Ray, S., & LaFramboise, T.(2012).Accurate estimation of short read mapping quality for next-generation genome sequencing..Bioinformatics (Oxford, England),28(18),i349-i355.
Ruffalo, M., LaFramboise, T., & Koyutürk, M.(2011).Comparative analysis of algorithms for next-generation sequencing read alignment..Bioinformatics (Oxford, England),27(20),2790-6.
Ruffalo, M., & Gratzl, M.(1976).Binding of nitroxide stearate spin labels to bovine serum albumin..Biochimica et biophysica acta,446(1),134-42.