Marzieh Ayati

Publications

Y\ilmaz, Serhan, Ayati, M., Schlatzer, D., \cCi\ccek, A Erc\"ument, D., Chance, M., & Koyut\"urk, Mehmet, M. (2021). Robust inference of kinase activity using functional networks. Nature communications, 12 (1), 1--12.
Ayati, M., Chance, M., & Koyutürk, M. (2020). Co-Phosphorylation Networks Reveal Subtype-Specific Signaling Modules in Breast Cancer. Bioinformatics.
Ayati, M., Wiredja, D., Schlatzer, D., Maxwell, S., Li, Z., Koyut�rk, M., & Chance, M. (2019). CoPhosK: A method for comprehensive kinase substrate annotation using co-phosphorylation analysis. PLoS Computational Biology, 15 (2).
Liu, D., Skomorovska, Y., Song, Y., Bowler, E., Harris, P., Ravasz, M., Bailey, S., Ayati, M., Tamai, K., Koyutürk, M., Yuan, X., Wang, Z., Wang, Y., & Ewing, R. (2019). ELF3 is an antagonist of oncogenic-signalling-induced expression of EMT-TF ZEB1. Cancer Biology and Therapy, 20 (1), 90-100.
Wiredja, D., Ayati, M., Mazhar, S., Sangodkar, J., Maxwell, S., Schlatzer, D., Narla, G., Koyutürk, M., & Chance, M. (2017). Phosphoproteomics Profiling of Nonsmall Cell Lung Cancer Cells Treated with a Novel Phosphatase Activator. Proteomics.
Ayati, M., & Koyutürk, M. (2016). PoCos: Population Covering Locus Sets for Risk Assessment in Complex Diseases. PLoS computational biology, 12 (11), e1005195.