Mark Chance

Patents Pending

2012, "SYSTEMS AND METHODS OF SELECTING COMBINATORIAL COORDINATELY DYSREGULATED BIOMARKER SUBNETWORK" , Mehmet Koyutürk, Salim Chowdhury, Rod Nibbe, & Mark Chance.

Publications

Y\ilmaz, Serhan, Ayati, M., Schlatzer, D., \cCi\ccek, A Erc\"ument, D., Chance, M., & Koyut\"urk, Mehmet, M. (2021). Robust inference of kinase activity using functional networks. Nature communications, 12 (1), 1--12.
Maxwell, S., Chance, M., & Koyutürk, M. (2017). Linearity of network proximity measures: implications for set-based queries and significance testing. Bioinformatics, 33 (9), 1354--1361.
Hopfer, U., Triolo, R., Elias, A., Kilgore, K., DiMarco, A., Bogie, K., Vette, A., Audu, M. L., Kobetic, R. L., Chang, S. L., Chance, M. L., Dukelow, S. L., Bourbeau, D. L., Brose, S. L., Gustafson, K. J., Kiss, Z. J., & Mushahwar, V. J. (2014). Functional electrical stimulation and spinal cord injury.. Physical medicine and rehabilitation clinics of North America, 25 (3), 631-54, ix.
Liu, Y., Koyutürk, M., Maxwell, S., & Chance, M. (2014). Discovery of common sequences absent in the human reference genome using pooled samples from next generation sequencing. BMC Genomics, 15 (685).
Patel, V., Gokulrangan, G., Chowdhury, S., Chen, Q., Sloan, A., Koyutürk, M., Barnholtz-Sloan, J., & Chance, M. (2013). Network signatures of survival in glioblastoma multiforme.. PLoS computational biology, 9 (9), e1003237.
Erten, S., Chowdhury, S., Guan, X., Nibbe, R., Barnholtz-Sloan, J., Chance, M., & Koyutürk, M. (2012). Identifying stage-specific protein subnetworks for colorectal cancer.. BMC proceedings, 6 Suppl 7 , S1.
Bebek, G., Koyutürk, M., Price, N., & Chance, M. (2012). Network biology methods integrating biological data for translational science.. Briefings in bioinformatics, 13 (4), 446-59.
Liu, Y., Koyutürk, M., Barnholtz-Sloan, J., & Chance, M. (2012). Gene interaction enrichment and network analysis to identify dysregulated pathways and their interactions in complex diseases.. BMC systems biology, 6 , 65.
Liu, Y., Koyutürk, M., Maxwell, S., Zhao, Z., & Chance, M. (2012). Integrative analysis of common neurodegenerative diseases using gene association, interaction networks and mRNA expression data.. AMIA Summits on Translational Science proceedings AMIA Summit on Translational Science, 2012 , 62-71.
Liu, Y., Maxwell, S., Feng, J., Zhu, X., Elston, R., Koyutürk, M., & Chance, M. (2012). Gene, pathway and network frameworks to identify epistatic interactions of single nucleotide polymorphisms derived from GWAS data.. BMC systems biology, 6 Suppl 3 , S15.
Nibbe, R., Chowdhury, S., Koyutürk, M., Ewing, R., & Chance, M. (2011). Protein-protein interaction networks and subnetworks in the biology of disease.. Wiley interdisciplinary reviews. Systems biology and medicine, 3 (3), 357-67.
Chowdhury, S., Nibbe, R., Chance, M., & Koyutürk, M. (2011). Subnetwork state functions define dysregulated subnetworks in cancer.. Journal of computational biology, 18 (3), 263-81.
Liu, Y., Patel, S., Nibbe, R., Maxwell, S., Chowdhury, S., Koyutürk, M., Zhu, X., Larkin, E., Buxbaum, S., Punjabi, N., Gharib, S., Redline, S., & Chance, M. (2011). Systems biology analyses of gene expression and genome wide association study data in obstructive sleep apnea.. Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing.
Bebek, G., Chance, M., Koyutürk, M., Price, N., Francisco, M., Bustamante, C., Leal, S., Foster, J., Moore, J., Bernauer, J., & Others, J. (2011). Pacific symposium on biocomputing 2011. Unknown Journal.
Nibbe, R., Koyut\"urk, Mehmet, R., & Chance, M. (2010). An integrative-omics approach to identify functional sub-networks in human colorectal cancer. PLoS computational biology, 6 (1), e1000639.